_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
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 Blastx evalue: 2e-21
 Query name: gi|831574331|ref|XP_012736019.1| PREDICTED: redox-regulatory protein FAM213A-like isoform X3 [Fundulus heteroclitus]
 Query range: 1-210  (total 212)

 Target: /data/www-rg/seblastian_results/874454371/tempfiles/temptarget.fasta
 Chromosome: CM007935.1:subseq_79631676,105056_ Strand: +
 Positions:
 -Exon 1  50021        50165
 -Exon 2  50648        50739
 -Exon 3  50939        51079
 -Exon 4  53963        54127
 -Exon 5  54976        55062

 Redox box: YES

Query   MGMWSLGLGAVGAAMAGIFLANTDWCLPKSANASLEHLEDADLRSTTDD <---Intron---> SNVIKAKSLWEKNGAVVMAVRRPGUFLCRE <---
        ||||||||| /| |/ |||||||| || |/| ||||/||||||||| || <   482bp    >  | ||||/|||| ||||||||||||||||| <   
Target  MGMWSLGLGTLGVAIVGIFLANTDLCLTKAAQASLEYLEDADLRSTGDD                ENTIKAKALWEKTGAVVMAVRRPGUFLCRE     
        agattcgcgatgggaggatcgaagttcaaggcgtcgtcggggcctaggg                gaaaagagctgaaggggaggcccgttttag     
        tgtgctgtgctgtcttgtttcacatgtcaccacctaataacatgccga                aaactacactgaacgctttctggcggttgga     
        ggggtgtggcaatcttaccgcctcgtgcgtcgcgggcggcacccctac                tgccagcatgggggaaacgtaagcaatgcag     
                                                                                                 *          

Query   Intron---> EASELSSLKPQLEELGVPLVAVVKENVGTEIQDFRPHFAGDIYVDEK <---Intron---> KHFYGPLQRRMGGLGFIRLGVWQNFM
        199bp    > ||||||||| |||/||||||||||||/|||||||||||||||||||| <   2883bp   >  ||||||||/||||||||||||||||
Target             EASELSSLKTQLEDLGVPLVAVVKENIGTEIQDFRPHFAGDIYVDEK                HHFYGPLQRKMGGLGFIRLGVWQNFM
                   ggtgcttcaaccggcggccggggagaagagacgtccctgggatggga                ccttgcccaaaggcgtaccggtcata
                   accatcctacataatgtcttcttaaatgcataatgcatcgatataaa                aatagctagatggtgttgtgtgaatt
                   atcggctggcgtgtcgctatcggggcccggcgccaacctgcctacgg                ccctcaagggggggccctgggggctg
                                                                                                            

Query   RAWKSGYEGNMNGEGFILGGVFVIGPGDQ <---Intron---> GILLEHKEKEFGDKVDTANVLKAARKIVP
        ||||/|| ||| ||||/|||||||| |/| <   848bp    > ||||||/|/|||/||/  /||/| //|||
Target  RAWKAGYHGNMLGEGFVLGGVFVIGAGNQ                GILLEHREEEFGNKVENQDVLQAVKRIVP
        cgtaggtcgaatgggtgcgggtgagggac                gaccgcagggtgaaggacggtcggaaagc
        gcgacgaagattgagtttggttttgcgaa                gtttaagaaatgaataaaattactagttc
        gcggctctccggggcccgacgtcccggcg                attggcggggtccaggcattggtcgatta
                                                                                  
 Sequence until next stop: 
GTGCAATAA
 V  Q  * 

 Distance CDS-SECIS: 651 ; UGA-SECIS: 1059

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = CM007935.1:subseq_79631676,105056_ Strand = + Positions = 55714 - 55785
 Found by:  Infernal (score=32.66) Covels (score=28.38)
 Stem2 length = 9   Apical loop length = 15   Insertion in stem2 = 0, 0
 Free Energy = -14.96

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         (((((((((.--....{[[((((((([{({(...............)})}])))))))]]}----....)))))))))
 target  UGUGUGUUUA--UUAAUGAAGACCUGACUGUAAACUCGGUGACGAGGGGAGCAGGUUUGAU----AUCCAAACACACA
                         ****           ^^^                       ****